{ "_id": "6a1ea2b7b25058d4daad7471", "Package": "inTextSummaryTable", "Type": "Package", "Title": "Creation of in-Text Summary Table", "Version": "3.3.5", "Date": "2025-09-24", "Authors@R": "c(\nperson(given = \"Laure\", family = \"Cougnaud\", role = c(\"aut\", \"cre\"),\nemail = \"laure.cougnaud@openanalytics.eu\"),\nperson(given = \"Michela\", family = \"Pasetto\", role = \"aut\",\nemail = \"michela.pasetto@openanalytics.eu\"),\nperson(given = \"Margaux\", family = \"Faes\",\nrole = \"rev\", comment = \"tests\"),\nperson(given = \"Open Analytics\", role = \"cph\")\n)", "Description": "Creation of tables of summary statistics or counts for\nclinical data (for 'TLFs'). These tables can be exported as\nin-text table (with the 'flextable' package) for a Clinical\nStudy Report (Word format) or a 'topline' presentation\n(PowerPoint format), or as interactive table (with the 'DT'\npackage) to an html document for clinical data review.", "URL": "https://github.com/openanalytics/inTextSummaryTable", "BugReports": "https://github.com/openanalytics/inTextSummaryTable/issues", "License": "MIT + file LICENSE", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "SystemRequirements": "pandoc (to export an interactive summary table to a\nfile)", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev\nlibxml2-dev libssl-dev libx11-dev zlib1g-dev", "Repository": "https://openanalytics.r-universe.dev", "Date/Publication": "2025-09-24 15:43:41 UTC", "RemoteUrl": "https://github.com/openanalytics/intextsummarytable", "RemoteRef": "HEAD", 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present in reference: either in columns in a dataset or in reference set.", "topics": [ "checkVar" ] }, { "page": "checkVarLabInclude", "title": "Check the 'varLabInclude' variable.", "topics": [ "checkVarLabInclude" ] }, { "page": "combine", "title": "Combine objects", "topics": [ "combine" ] }, { "page": "combine.summaryTable", "title": "Combine summary statistics table", "topics": [ "combine.summaryTable" ] }, { "page": "combineColTotal", "title": "Combine the column total for a combined summary table", "topics": [ "combineColTotal" ] }, { "page": "combineVariables", "title": "Create a data.frame combining a set of records from same or multiple variables.", "topics": [ "combineVariables" ] }, { "page": "computeSummaryStatistics", "title": "Compute summary statistics of interest of an unique variable of interest.", "topics": [ "computeSummaryStatistics" ] }, { "page": "computeSummaryStatisticsTable", "title": "Compute summary statistics for a specific dataset and variables of interest", "topics": [ "computeSummaryStatisticsTable" ] }, { "page": "convertSummaryStatisticsTableToFlextable", "title": "Convert summary statistics table to flextable", "topics": [ "convertSummaryStatisticsTableToFlextable" ] }, { "page": "convertVarFlag", "title": "Convert flag variable to a format such as only the flagged records are counted in the summary table.", "topics": [ "convertVarFlag" ] }, { "page": "convertVarRowVarColVarToFactor", "title": "Convert 'rowVar', 'colVar' and character 'var' in 'data' to factor", "topics": [ "convertVarRowVarColVarToFactor" ] }, { "page": "convertVectToBinary", "title": "Convert vector to a bincode of 0/1 based on consecutive values in the vector.", "topics": [ "convertVectToBinary" ] }, { "page": "createFlextableWithHeader", "title": "Create a flextable, setting the column names to syntactic names if it is not the case.", "topics": [ "createFlextableWithHeader" ] }, { "page": "cv", "title": "Compute the percentage coefficient of variation, 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"topics": [ "formatPercentage" ] }, { "page": "formatSummaryStatisticsTable", "title": "Format summary statistics table for export", "topics": [ "formatSummaryStatisticsTable" ] }, { "page": "formatSummaryStatisticsTableFlextable", "title": "Merge nested rows of a summary table for a format compatible with 'flextable'", "topics": [ "formatSummaryStatisticsTableFlextable" ] }, { "page": "geomCV", "title": "Compute geometric coefficient of variation (in a scale from 0 to 100).", "concept": [ "stats utility functions" ], "topics": [ "geomCV" ] }, { "page": "geomMean", "title": "Compute geometric mean.", "concept": [ "stats utility functions" ], "topics": [ "geomMean" ] }, { "page": "geomSD", "title": "Compute geometric standard deviation", "concept": [ "stats utility functions" ], "topics": [ "geomSD" ] }, { "page": "geomSE", "title": "Compute geometric standard error of the mean.", "concept": [ "stats utility functions" ], "topics": [ "geomSE" ] }, { "page": "getColorPaletteTable", "title": "Get color palette for the tables", "topics": [ "getColorPaletteTable" ] }, { "page": "getDimPage", "title": "Get dimension of the page available for content for standard Word report or PowerPoint presentation.", "topics": [ "getDimPage" ] }, { "page": "getListing", "title": "Format or create flextable for listings.", "topics": [ "getListing" ] }, { "page": "getMaxNDecimals", "title": "Get maximum number of decimals in a variable, based on pre-defined rule and/or data.", "concept": [ "decimals" ], "topics": [ "getMaxNDecimals" ] }, { "page": "getMaxNDecimalsData", "title": "Get maximum number of decimals in a variable based on the data ('getNDecimalsData')", "concept": [ "decimals" ], "topics": [ "getMaxNDecimalsData" ] }, { "page": "getNDecimals", "title": "Get number of decimals for a specific vector.", "concept": [ "decimals" ], "topics": [ "getNDecimals" ] }, { "page": "getNDecimalsData", "title": "Get number of decimals based on the data in a numeric vector. Note: NA is returned if the element is missing (NA).", "concept": [ "decimals" ], "topics": [ "getNDecimalsData" ] }, { "page": "getNDecimalsRule", "title": "Get number of decimals based pre-defined rule(s).", "topics": [ "getNDecimalsRule" ] }, { "page": "getPatternPosition", "title": "Get position(s) (start, end) of a pattern in a string.", "topics": [ "getPatternPosition" ] }, { "page": "getStats", "title": "Get default set of statistics for one particular variable.", "topics": [ "getStats" ] }, { "page": "getStatsData", "title": "Get default set of statistics for variables of interest and specific dataset.", "topics": [ "getStatsData" ] }, { "page": "getSummaryStatisticsTable", "title": "Get summary statistics table", "topics": [ "getSummaryStatisticsTable" ] }, { "page": "inTextSummaryTable", "title": "inTextSummaryTable: creation of in-text summary table", "topics": [ "inTextSummaryTable-package", "inTextSummaryTable" ] }, { "page": "inTextSummaryTable-common-args", "title": "Arguments used across the functions of the inTextSummaryTable package.", "topics": [ "inTextSummaryTable-common-args" ] }, { "page": "inTextSummaryTable-DT-args", "title": "Common arguments for the functionalities of the inTextSummaryTable package for DT export.", "topics": [ "inTextSummaryTable-DT-args" ] }, { "page": "inTextSummaryTable-flextable-args", "title": "Common arguments for the functionalities of the inTextSummaryTable package for flextable export.", "topics": [ "inTextSummaryTable-flextable-args" ] }, { "page": "inTextSummaryTable-stats", "title": "Statistics in the in-text table package.", "topics": [ "inTextSummaryTable-stats" ] }, { "page": "inTextSummaryTable-stats-utility", "title": "Common arguments for the for the statistics utility functions of the inTextSummaryTable package.", "topics": [ "inTextSummaryTable-stats-utility" ] }, { "page": "pageDimPresentation", "title": "Page dimension for powerpoints", "topics": [ "pageDimPresentation" ] }, { "page": "postProcessVarFlag", "title": "Post-process the summary statistics table with variable flag.", "topics": [ "postProcessVarFlag" ] }, { "page": "se", "title": "Compute standard error of the mean.", "concept": [ "stats utility functions" ], "topics": [ "se" ] }, { "page": "subjectProfileSummaryPlot", "title": "Plot subject summary profile.", "topics": [ "subjectProfileSummaryPlot" ] }, { "page": "subjectProfileSummaryTable", "title": "Plot a table with 'ggplot' of a text variable of interest.", "topics": [ "subjectProfileSummaryTable" ] }, { "page": "summaryTable", "title": "'summaryTable'", "topics": [ "summaryTable" ] }, { "page": "tableColorsPresentation", "title": "Colors for tables in a presentation style", "topics": [ "tableColorsPresentation" ] }, { "page": "tableColorsReport", "title": "Colors for tables in a report style", "topics": [ "tableColorsReport" ] }, { "page": "uniqueVarWithOrder", "title": "Get unique variables with meaningful order.", "topics": [ "uniqueVarWithOrder" 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