{ "_id": "6a1ea55cb25058d4daad86e8", "Package": "patientProfilesVis", "Type": "Package", "Title": "Visualization of Patient Profiles", "Version": "2.0.10", "Date": "2025-09-04", "Authors@R": "c(\nperson(given = \"Laure\", family = \"Cougnaud\",\nrole = c(\"aut\", \"cre\"), email = \"laure.cougnaud@openanalytics.eu\"),\nperson(given = \"Margaux\", family = \"Faes\",\nrole = \"rev\", comment = \"tests\"),\nperson(given = \"Open Analytics\", role = \"cph\")\n)", "Description": "Creation of patient profile visualizations for\nexploration, diagnostic or monitoring purposes during a\nclinical trial. These static visualizations display a\npatient-specific overview of the evolution during the trial\ntime frame of parameters of interest (as laboratory, ECG, vital\nsigns), presence of adverse events, exposure to a treatment;\nassociated with metadata patient information, as demography,\nconcomitant medication. The visualizations can be tailored for\nspecific domain(s) or endpoint(s) of interest. Visualizations\nare exported into patient profile report(s) or can be embedded\nin custom report(s).", "URL": "https://github.com/openanalytics/patientProfilesVis", "BugReports": "https://github.com/openanalytics/patientProfilesVis/issues", "License": "MIT + file LICENSE", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "SystemRequirements": "latex, cairo (for report creation)", "Config/pak/sysreqs": "libcairo2-dev cmake make texlive libicu-dev\nlibuv1-dev libx11-dev zlib1g-dev", "Repository": "https://openanalytics.r-universe.dev", "Date/Publication": "2025-09-04 19:45:56 UTC", "RemoteUrl": "https://github.com/openanalytics/patientprofilesvis", "RemoteRef": "HEAD", "RemoteSha": "2286818f9442c835a686830645bd91af3a710a17", "RemoteSubdir": "patientProfilesVis", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 09:36:46 UTC", "User": "root" }, "Author": "Laure Cougnaud [aut, cre],\nMargaux Faes [rev] (tests),\nOpen Analytics [cph]", "Maintainer": "Laure Cougnaud ", "MD5sum": 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"https://github.com/openanalytics/patientprofilesvis", "_realowner": "openanalytics", "_cranurl": true, "_releases": [ { "version": "2.0.0", "date": "2021-06-14" }, { "version": "2.0.1", "date": "2021-07-13" }, { "version": "2.0.2", "date": "2021-09-28" }, { "version": "2.0.5", "date": "2022-11-18" }, { "version": "2.0.6", "date": "2023-12-12" }, { "version": "2.0.7", "date": "2024-03-09" }, { "version": "2.0.8", "date": "2024-06-14" }, { "version": "2.0.9", "date": "2024-06-18" }, { "version": "2.0.10", "date": "2025-09-05" } ], "_exports": [ "convertAesVar", "createSubjectProfileReport", "filterData", "getColorPalettePatientProfile", "getNLinesSubjectProfile", "getShapePalettePatientProfile", "getTimeTrans", "subjectProfileCombine", "subjectProfileEventPlot", "subjectProfileIntervalPlot", "subjectProfileLinePlot", "subjectProfileReportFormat", "subjectProfileTextPlot" ], "_help": [ { "page": "addReferenceLinesProfilePlot", "title": "Add reference lines to a profile plot", "topics": [ "addReferenceLinesProfilePlot" ] }, { "page": "checkTimeExpand", "title": "Check if some of the modules are time expanded, and extract maximum time expand for each module.", "topics": [ "checkTimeExpand" ] }, { "page": "checkTimeTrans", "title": "Check if the subject profiles are time transformed, and if some of the plots to align (with specified 'timeLim') have compatible time transformation alignments.", "topics": [ "checkTimeTrans" ] }, { "page": "checkVar", "title": "Check if specified variable(s) are present in the data.", "topics": [ "checkVar" ] }, { "page": "combineVerticallyGGplot", "title": "Combine vertically multiple 'ggplot'.", "topics": [ "combineVerticallyGGplot" ] }, { "page": "convertAesVar", "title": "Convert aesthetic variable for patient profile visualization.", "topics": [ "convertAesVar" ] }, { "page": "countNLines", "title": "Count number of lines ('\\n' character) per character in a vector", "topics": [ "countNLines" ] }, { "page": "createSubjectProfileReport", "title": "Create subject profile report.", "topics": [ "createSubjectProfileReport" ] }, { "page": "defineIndex", "title": "Define LaTeX index based on specified variable(s) of the dataset", "topics": [ "defineIndex" ] }, { "page": "filterData", "title": "Filter a dataset for records of interest, for use in the patient profiles.", "topics": [ "filterData" ] }, { "page": "filterMissingInVar", "title": "Filter missing records in data in the time and y variables, with informative message.", "topics": [ "filterMissingInVar" ] }, { "page": "formatParamVarTextPlot", "title": "Format text variables for the subject profile text plotting function.", "topics": [ "formatParamVarTextPlot" ] }, { "page": "formatTimeInterval", "title": "Set missing start/end time variable in the data.", "topics": [ "formatTimeInterval" ] }, { "page": "formatTimeLim", "title": "Format specified 'timeLim'.", "topics": [ "formatTimeLim" ] }, { "page": "getAesScaleManual", "title": "Get custom 'scale_[type]_manual' function", "topics": [ "getAesScaleManual" ] }, { "page": "getColorPalettePatientProfile", "title": "Get a color palette for patient profile visualizations.", "topics": [ "getColorPalettePatientProfile" ] }, { "page": "getMaxNLinesCombinePlot", "title": "Get maximum number of lines of a 'combined plot' for a specific document", "topics": [ "getMaxNLinesCombinePlot" ] }, { "page": "getNLinesLabel", "title": "Get number of lines for specific label either from a 'ggplot2' object via 'gg' or from the label via 'value'", "topics": [ "getNLinesLabel" ] }, { "page": "getNLinesLegend", "title": "Get number of lines in the legend, either from directly the 'ggplot2' object, or from the values of the legend ('legendValues') and title ('legendTitle')", "topics": [ "getNLinesLegend" ] }, { "page": "getNLinesSubjectProfile", "title": "Get approximately the number of 'lines' in the vertical direction of a subject profile.", "topics": [ "getNLinesSubjectProfile" ] }, { "page": "getOptimalColWidth", "title": "Get optimal column widths, based on the minimum word size and median number of characters in each column.", "topics": [ "getOptimalColWidth" ] }, { "page": "getPageVar", "title": "Get variable with page of the plot, used for automatic paging of a plot", "topics": [ "getPageVar" ] }, { "page": "getPathTemplate", "title": "Get path of the report template in the 'patientProfilesVis' package", "topics": [ "getPathTemplate" ] }, { "page": "getShapePalettePatientProfile", "title": "Get a shape palette for patient profile visualizations.", "topics": [ "getShapePalettePatientProfile" ] }, { "page": "getSplitVectorByInt", "title": "Split/combine a vector of size(s) to have a fixed combined size", "topics": [ "getSplitVectorByInt" ] }, { "page": "getTimeLimSubjectProfilePlots", "title": "Get the limits to set for the subject profile plots, depending on the alignment policy set.", "topics": [ "getTimeLimSubjectProfilePlots" ] }, { "page": "getTimeTrans", "title": "Get useful transformation for the time variable in patient profiles.", "topics": [ "getTimeTrans" ] }, { "page": "getWidthPlot", "title": "Get width for a plot for a certain page layout", "topics": [ "getWidthPlot" ] }, { "page": "interactionWithMissing", "title": "Get interaction variable between different variables.", "topics": [ "interactionWithMissing" ] }, { "page": "isSubjectProfileTimeVariant", "title": "Check if the all profile(s) is/are 'time-variant', so not a subject profile 'text' module or empty plot", "topics": [ "isSubjectProfileTimeVariant" ] }, { "page": "patientProfilesVis-common-args", "title": "Arguments used across the functions of the patientProfilesVis package.", "topics": [ "patientProfilesVis-common-args" ] }, { "page": "patientProfilesVis-palette", "title": "Parameters for all patient profiles visualization palette functions.", "topics": [ "patientProfilesVis-palette" ] }, { "page": "prepareSubjectProfile", "title": "prepare list of subject profile (s) to be combined 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