NEWS

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inTextSummaryTable 3.3.3 (2024-06-12)

• vignette: plot with 'presentation' style only created if Tahoma font is available
• fixes for ggplot2 updates: - fix tests for new warning - no use of aes_string

inTextSummaryTable 3.3.2 (2024-03-09)

• fix when percentage computed by variable and only one variable is specified
• subjectProfileSummaryPlot: - fix when linetype/shape requested but no color variable - tests: fix for ggplot2 >= 3.5.0 (new implementation guide system)
• exportSummaryStatisticsTable: - tests: fix for flextable >= 0.9.5 (refactoring data structure content)
• doc: remove description-like items in itemize (R-devel 11/10/2023)

inTextSummaryTable 3.3.1 (2023-09-12)

• compare package version with character (for R > 4.3.1)
• package overview help: add alias 'inTextSummaryTable-package'

inTextSummaryTable 3.3.0 (2023-03-03)

• support export of a list of tables to txt files
• subjectProfileSummaryPlot - ggExtra: - fix in case ggExtra contains data with different range - support multiple calls via a function
• export to docx - landscape: fix inclusion of empty pages
• flextable export:
• fix vertical/horizontal merging header for columns with identical elements
• option to not merge header (colHeaderMerge)
• subjectProfileSummaryTable: use :: for .pt (ggplot2)
• getStats - formatPercentage parameter: remove unnecessary :::

inTextSummaryTable 3.2.1 (2022-11-18)

• subjectProfileSummaryPlot - updates for ggplot2 >= 3.4.0: - geom line/error bar: switch from size -> linewidth

inTextSummaryTable 3.2.0 (2022-10-01)

• add extra doc (vignette) combining tables descriptive and inferential stats
• fix unit test for pandoc >= 2.19
• support multiple (consecutive) text formatting in one table cell
• flextable: specification of columns width (columnsWidth)

inTextSummaryTable 3.1.2

• no exports of: - exportSummaryStatisticsTableToFlextable & exportSummaryStatisticsTableToDT -> exportSummaryStatisticsTable can be used instead - convertSummaryStatisticsTableToFlextable

inTextSummaryTable 3.1.1 (2022-02-22)

• unit tests: extra fix stringsAsFactors (R >= 4.0.0)
• fixes for tibble input

inTextSummaryTable 3.1.0 (2021-09-28)

• computeSummaryStatisticsTable: output is S3 class: 'summaryTable'
• functionality to combine 'summaryTable'
• exportSummaryStatisticsTable is now available (as well) via 'export'
• ft export: fix empty line for table with flag var, var with subgroups and multiple stats
• group var (if included) is set to NA for a flag var
• option for warning/nothing if diff var values by subject
• unit tests: updates based on independent review

inTextSummaryTable 3.0.1 (2021-07-13)

• formatSummaryStatisticsTable: fix for column var with space
• unit tests/doc: fix for Pandoc (CRAN Solaris) + SystemRequirements

inTextSummaryTable 3.0.0 (2021-06-10)

• get palettes from 'clinUtils'
• rename 'getFlextable' into 'getListing'
• add 'getDimPage'
• remove 'roundHalfUp' functionality
• add color-blind palette
• remove dependency from previous utilityFct package
• add 'getLabelVar' as dependency from 'clinUtils'
• roundUpText renamed to 'roundHalfUpTextFormat'
• roundUp renamed to 'roundHalfUp'
• roundUp: remove deprecated parameter 'format'
• rename 'roundCustom' to 'roundUp'
• add function 'roundCustom'
• add function 'getFlextable'

inTextSummaryTable 2.23.0

• new fct geomSE
• subjectProfileSummaryPlot: new parameter: tablePlotMargin

inTextSummaryTable 2.22.1

• unit tests

inTextSummaryTable 2.22.0

• add fontface parameter in 'subjectProfileSummaryTable'
• getStats: supports 'mean (sd)' and '(min, max)'
• subjectProfileSummaryPlot: - new parameter: tableYAxisLabs - pass colorLab to subjectProfileSummaryTable
• subjectProfileSummaryTable/subjectProfileSummaryPlot: new parameter: legendPosition
• subjectProfileSummaryTable: fix display color var categories in correct order

inTextSummaryTable 2.21.1

• fix export summary table to DT in case multiple title formatted as HTML

inTextSummaryTable 2.21.0

• add unit tests
• reorganize introduction vignette, help page for pkg
• error if stats if not in correct format
• getStats: 'n/N (%)' is named by default for consistency
• compute summary statistics table: - simpler impl for filter fct for var flag - percentage and header total column extracted from 'total' if dataTotalCol if a list - no error if unique stat name is in default stat name
• formatting flextable: - check row var total include - fix in case only one row total
• export to flextable: - in separated file if by var is specified
• export to DT: - title can be of length > 1 - pageDim should be of length 2 - fix when noEscapeVar contains all vars
• subject profile summary plot: - extra checks input params - fix ordering facets in case [x]Line specified - deprecate yLimExpand -> yAxisExpand
• subject profile summary table: - fix y-labels when color var is character
• compute stats/subject profile (table): simplify stats expr check

inTextSummaryTable 2.20.0

• add unit tests
• computeSummaryStatisticsTable: more formal checks + warning for var/[row|col]Var...
• computeSummaryStatisticsTable: fix in case varLab/rowVarLab/byVarLab not specified for all vars
• varSubgroupLab: change default 'variableGroup' -> 'Variable group'
• computeSummaryStatisticsTable: rowVarTotalByVar wrong spec: error -> warning, fix in case named charac
• computeSummaryStatisticsTableTotal: fix for warnings: 'attributes are not identical across measure variables...', 'cannot avoid coercion of factors...'

inTextSummaryTable 2.19.0

• add unit tests
• computeSummaryStatistics: fix for data with one column, extra error msg
• extension to percentage for records: computeSummaryStatisticsTable: 'statsPerc'; getStats: '%m','m (%)'
• computeSummaryStatisticsTable: fix for varFlag & [varInclude0 or varTotalInclude]
• computeSummaryStatistics: remove missing values in subjectVar (warning if this occur when var is specified)
• computeSummaryStatistics: simplify impl for empty data & cat var + filterEmptyVar TRUE by default for cat variable
• computeSummaryStatisticsTable: varInclude0 extended for subset of var

inTextSummaryTable 2.18.0

• exportSummaryStatisticsTableToDT: extend for expandVar/rowVarInSepCol/colVar
• subjectProfileSummaryPlot: xAxisExpand

inTextSummaryTable 2.17.0

• improve doc
• include unit tests
• computeSummaryStatisticsTable: fix when dataTotalPerc is specified but not rowVarTotalPerc
• roundCustomText: remove fix if digits is NA
• updates for utility pck 2.0.0
• internal functions: convertVarFlag
• fix error colVar -> colVarTotal in dataTotal
• extend 'file' parameter to export to all outputType
• computeSummaryStatistics: fix when no cat group is empty and statsExtra is specified

inTextSummaryTable 2.16.0

• change imports of color palette from utility to style pkg
• change flextable from style to utility pkg
• exportSummaryStatisticsTable: specify rowVarLab for DT output
• getStatsData: type and extra args for getStats for cat or cont variable separately
• same default for rowVarInSepCol (NULL) for DT and flextable output

inTextSummaryTable 2.15.0

• varLabInclude/statsLabInclude new parameters
• update vignette knitPrintListObjects
• subjectProfileSummaryPlot: minVar/maxVar

inTextSummaryTable 2.14.0

• roundCustomText: fix when digits is NA
• subjectProfileSummaryPlot: yTrans
• subjectProfileSummaryPlot: remove 'a' in legend when tableText is used
• computeSummaryStatisticsTable: fix order var for charac, or when not complete across colVar + unit tests

inTextSummaryTable 2.13.0

• example of greek letter in doc
• support custom formatting (superscript, subscript) for footnote

inTextSummaryTable 2.12.0

• getStatsData: extend type to any type available in getStats
• convertSummaryStatisticsTableToFlextable: fix padding header when multiple titles are provided
• formatSummaryStatisticsTable: fix when no total row
• computeSummaryStatistics: fix for R 4.0.0 stringsAsFactors = FALSE
• getStats: add 'n/N (%)'

inTextSummaryTable 2.11.0

• deprecate 'format' argument in 'roundCustomText'
• modify 'formatPercentage' function to assure that percentages have the same number of decimals
• include total counts per group with: 'var' set to 'all'
• conversion to flextable: varTotalInSepRow works for mixed table
• formatSummaryStatisticsTableFlextable: fix for extraction total when rowVar specified + fix extraction total rows
• getStatisticsSummaryStatisticsTable: fix for order stats when different stats by variable

inTextSummaryTable 2.10.0

• modify default legend in subjectProfileSummaryTable to substitute the 'a' with the point
• substitute 'expand_scale' with 'expansion' in subjectProfileSummaryTable only for ggplot2 >= 3.3
• unit test update for ggplot2 3.3.0
• subjectProfilePlot: remove 'tableLabel' (not used)

inTextSummaryTable 2.9.0

• remove '%' sign next to percentage in 'formatPercentage'
• modified 'getStats': when percentage is 100 it is not shown
• add unit tests for 'formatPercentage'
• add unit tests for 'getStats'
• formatSummaryStatisticsTable: check if multiple records in same row/col, check if only one 'stats' and no names
• computeSummaryStatistics: error when multiple different records for same subject for cont var + unit test
• exportSummaryStatisticsTableToFlextable: fix when empty df after filter total rows
• fix for flextable >= 0.5.9: 'display' -> 'compose'
• rowOrderCatLast: NULL by default, used if rowVar is factor and rowOrder is function
• computeSummaryStatisticsTable: fix when more columns in dataTotalRow than in data
• subjectProfileSummaryTable: export, fix when colorVar is not factor

inTextSummaryTable 2.8.0

• fix when 'variable' in 'colVar' when no other col vars

inTextSummaryTable 2.7.0

• 'variable' can be included in 'colVar'
• add text for explanation of 'rowVar' in 'computeSummaryStatisticsTable()'. Minor changes (e.g. typos) in the vignette.
• computeSummaryStatisticsTableTotal: fix in case rowVarTotalPerc is a factor

inTextSummaryTable 2.6.0

• subjectProfileSummaryPlot: xGap/xGapDiffNew new param
• computeSummaryStatisticsTable: fix for varFlag when only one variable is specified

inTextSummaryTable 2.5.2

• getStats: fix formatPercentage default (conflict with DT::formatPercentage)

inTextSummaryTable 2.5.1

• formatSummaryStatisticsTable: statistics in column with categorical variables is possible
• exportSummaryStatisticsTableToDT: remove: '.id' if no rowVar

inTextSummaryTable 2.5.0

• getStats: base statistics available in: 'type'
• getStats: fix for custom formatPercentage function

inTextSummaryTable 2.4.0

• export to DT: fix rowVarInSepCol <-> labelVars spec, pageLength not specified by default
• rowVarInSepCol default: NULL for flextable, rowVar otherwise
• outputType: 'data.frame-base'
• fix when one statistic and statistics in columns
• parameters can be passed to the toDT function
• DT output: numeric column if present (for filter box)

inTextSummaryTable 2.3.1

• getStatisticsSummaryStatisticsTable: stats: support simple list by variable
• computeSummaryStatisticsTable: sort variable/variableGroup before stats in output

inTextSummaryTable 2.3.0

• extend package to DT output (reorganize format/convert/export steps)
• computeSummaryStatisticsTable: ddply -> by (base R) to fix issue: names' attribute must be the same length as the vector

inTextSummaryTable 2.2.0

• possibility to have cells in bold

inTextSummaryTable 2.1.2

• rowOrder as a function: fix when row total is included
• introductory vignette: additional example for rowOrder

inTextSummaryTable 2.1.1

• example of the exportSummaryStatisticsTable function in the vignette

inTextSummaryTable 2.0.1

• computeSummaryStatisticsTable: fix for column header in case dataset for total columns is specified
• getStats: fix documentation: 'mean (se)'

inTextSummaryTable 2.0.0

• include vignette with template tables
• formatSummaryStatisticsTable: fixes when multiple records for total (rowVarTotalByVar)
• computeSummaryStatisticsTable: possibility to sort rows per total but not include total column
• convertVarFlag, varFlag
• varInclude0: to include empty rows for count variable
• computeSummaryStatisticsTable: possibility to specify varSubgroupLab even for one variable
• subjectProfileSummaryPlot: fix facet specification
• internal functions

inTextSummaryTable 1.8.0

• flextable functions moved to the style pkg

inTextSummaryTable 1.7.0

• computeSummaryStatisticsTable: varIncludeTotal -> varTotalInclude, possibility to include total only for a variable
• computeSummaryStatisticsTable: varTotalInSepRow new parameter
• include total per variable at the first row
• getStats: median\n(range) and includeName
• vignette: update demographic table + add example summary adverse events table

inTextSummaryTable 1.6.0

• example datasets moved to the utility pkg
• roundCustom -> roundCustomText

inTextSummaryTable 1.5.0

• convertSummaryStatisticsTableToFlextable: title for each element of byVar

inTextSummaryTable 1.4.0

• computeSummaryStatistics: dataTotalCol new param

inTextSummaryTable 1.3.0

• computeSummaryStatisticsTable: dataTotalRow
• get/computeSummaryStatisticTable: message and return NULL if no data
• computeSummaryStatisticsTable: rowOrderCatLast
• convertSummaryStatisticsTableToFlextable: doesn't merge rows with different padding (e.g. row header and row content)
• formatSummaryStatisticsTable: rowVarFormat (to include row variable in bold)
• get[]Flextable: set top/bottom padding to 0

inTextSummaryTable 1.2.1

• getNDecimals: fix when NA value, new: getMaxNDecimals
• convertSummaryStatisticsTableToFlextable: format superscript/subscript in title
• formatSummaryStatisticsTable: statsVar input param

inTextSummaryTable 1.2.0

• subjectProfileSummaryPlot: possibility to pass any parameters for geom_text_repel and list of expression/horizontal and vertical adjustments for label

inTextSummaryTable 1.1.0

• createFlextableWithHeader: fix in case no headerDf and ft are specified
• convertSummaryStatisticsTableToFlextable: remove line on top title
• subjectProfileSummaryPlot: themeIncludeVerticalGrid, vLine, fix table when only one value in x-axis
• subjectProfileSummaryPlot: fix when xVar is numeric and xAxisLabs not specified, multiple byVar,
• subjectProfileSummaryPlot: sizeLine also used for the error bars, default textSize depends on fontsize
• computeSummaryStatisticsTable: fix when no data, include 'statPercTotalN' column, ggExtra
• subjectProfileSummaryPlot: fix table n subjects when axes labs too big
• getStatisticsSummaryStatisticsTable: fix in case order statsVarInit and names(stats) different

inTextSummaryTable 1.0.0

• fix getStats
• formatSummaryStatisticsTable: remove 'Statistics' column if all the same
• getNDecimals
• getColorTable/colorTable parameter, pageDim parameter
• subjectProfileSummaryPlot: themeFct parameter, remove box and grid lines for table
• computeSummaryStatisticsTable: fix for multiple variables in byVar
• exportFlextableToDocx: breaksAfter
• convertSummaryStatisticsTableToFlextable: remove fixed width for statistic column
• getStats: summary add SE

inTextSummaryTable 0.0.10

• formatSummaryStatisticsTable: fix for rowSubtotalInSepRow
• rowAutoMerge, rowVarTotalPerc, rowVarTotalExtra
• formatSummaryStatisticsTable: remove 'Statistic' if only one statsVar specified and not named
• standardize 'Lab' parameters
• standardize row total specification: rowVarTotalInclude/rowVarSubtotalInclude -> rowVarTotalInclude, rowSubtotalInSepRow -> rowVarTotalInSepRow
• remove border in title, minimal h/v lines: only per row/column group, merge header columns for total and if needed
• subscript supported: formatSuperscriptToFlextable -> formatSuperSubscriptToFlextable
• vline parameter and default no vertical lines
• fix use use rowPadBase

inTextSummaryTable 0.0.9

• statsValueLab, dataTotalPerc, colVarTotal, colVarTotalPerc new parameters
• export exportFlextableToDocx
• se, cv, geomMean, geomSD, geomCV function
• reduce height header and footer

inTextSummaryTable 0.0.8

• exportSummaryStatisticsTable: create directory of file if not present
• createFlextableWithHeader: correct order if multiple title
• export convertSummaryStatisticsTableToFlextable function
• export to file in convertSummaryStatisticsTableToFlextable
• colHeaderTotalInclude, statsExtra parameter

inTextSummaryTable 0.0.7

• subjectProfileSummaryPlot: fixes xAxisLabs specification with jitter x-axis
• computeSummaryStatistics: fix for order colVar in case total colum included
• set font presentation to Tahoma and default font size
• fix test roundCustom

inTextSummaryTable 0.0.6

• getSummaryStatisticsTable: remove sub-total statistics if all nested vars are missing
• computeSummaryStatisticsByRowColVar: doesn't propagate NA for interaction of row/colVar variables
• computeSummaryStatisticsTable: support combine use of colTotalInclude with rowTotalInclude or rowSubtotalInclude
• new parameter: style
• convertSummaryStatisticsTableToFlextable: format superscript inside table to flextable
• new function: get[]Flextable
• subjectProfileSummaryPlot: xAxisLabs, byVar, table, hLine
• [row|col]VarDataLevels
• re-label all statistics with 'stat' and attributes in 'summaryTable' slot
• combineVariables: fix in case empty input data

inTextSummaryTable 0.0.5

• roundCustom: format parameter, 'text' by default
• set empty label for when variable specified for count tablee
• set empty title by default
• formatSummaryStatisticsTable: merge row if only one element
• set rowPadBase to 4
• horizontal lines: remove horizontal lines in statsLayout is 'row'
• subjectProfileSummaryPlot: seVar optional
• compute/export[SummaryStatisticsTable]: add defaults for attributes summaryTable

inTextSummaryTable 0.0.4

• statsLayout parameter
• remove Percm (percentage of records based on dataTotal)
• byVar and getAttribute function
• example mock-up table in vignette

inTextSummaryTable 0.0.3

• convertVarToFactorWithOrder: remove warning in case only one row variable is specified and add check if otherVars is of length 1
• additional example vignette: combineVars, function for rowOrder

inTextSummaryTable 0.0.2

• add tests
• consistent functions naming: computeSummaryStatistics -> computeSummaryStatisticsTable, getSummaryStatistics -> computeSummaryStatistics
• subjectProfileSummaryPlot: fix for 'useLinetype'
• formatSummaryStatisticsTable: fix issue padding in case statistic is a character
• computeSummaryStatisticsTable: fix in case rowVar is a factor and rowTotalInclude, new parameter: colTotalInclude O new parameter: rowSubtotalInclude
• new function: combineVariables
• functionalities to order rows with convertVarToFactorWithOrder
• computeSummaryStatisticsTable and new computeSummaryStatisticsByRowColVar: include 0 counts
• include mixed table, multiple variables

inTextSummaryTable 0.0.1

• initial commit