Package: inTextSummaryTable 3.3.3

Laure Cougnaud

inTextSummaryTable: Creation of in-Text Summary Table

Creation of tables of summary statistics or counts for clinical data (for 'TLFs'). These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report (Word format) or a 'topline' presentation (PowerPoint format), or as interactive table (with the 'DT' package) to an html document for clinical data review.

Authors:Laure Cougnaud [aut, cre], Michela Pasetto [aut], Margaux Faes [rev], Open Analytics [cph]

inTextSummaryTable_3.3.3.tar.gz
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inTextSummaryTable_3.3.3.tgz(r-4.4-any)inTextSummaryTable_3.3.3.tgz(r-4.3-any)
inTextSummaryTable_3.3.3.tar.gz(r-4.5-noble)inTextSummaryTable_3.3.3.tar.gz(r-4.4-noble)
inTextSummaryTable_3.3.3.tgz(r-4.4-emscripten)inTextSummaryTable_3.3.3.tgz(r-4.3-emscripten)
inTextSummaryTable.pdf |inTextSummaryTable.html✨
inTextSummaryTable/json (API)
NEWS

# Install 'inTextSummaryTable' in R:
install.packages('inTextSummaryTable', repos = c('https://openanalytics.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/openanalytics/intextsummarytable/issues

On CRAN:

32 exports 1 stars 1.09 score 94 dependencies 47 scripts 1.1k downloads

Last updated 3 months agofrom:4a21551c78. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winNOTESep 11 2024
R-4.5-linuxNOTESep 11 2024
R-4.4-winOKSep 11 2024
R-4.4-macOKSep 11 2024
R-4.3-winOKSep 11 2024
R-4.3-macOKSep 11 2024

Exports:combinecombineVariablescomputeSummaryStatisticscomputeSummaryStatisticsTableconvertVectToBinarycreateFlextableWithHeadercvexportexportFlextableToDocxexportSummaryStatisticsTableformatPercentagegeomCVgeomMeangeomSDgeomSEgetColorPaletteTablegetDimPagegetListinggetMaxNDecimalsgetMaxNDecimalsDatagetNDecimalsgetNDecimalsDatagetNDecimalsRulegetStatsgetStatsDatagetSummaryStatisticsTablepageDimPresentationsesubjectProfileSummaryPlotsubjectProfileSummaryTabletableColorsPresentationtableColorsReport

Dependencies:askpassbase64encbitbit64bslibcachemcliclinUtilscliprcolorspacecowplotcpp11crayoncrosstalkdata.tabledigestDTevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsfsgdtoolsggplot2ggrepelgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeofficeropensslpillarpkgconfigplyrprettyunitsprogresspromisesR6raggrappdirsRColorBrewerRcppreadrreshape2rlangrmarkdownsassscalesstringistringrsyssystemfontstextshapingtibbletidyselecttinytextzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yamlzip

Advanced user in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-advanced.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-09-29
Started: 2022-02-01

Aesthetics

Michela Pasetto and Laure Cougnaud

Rendered frominTextSummaryTable-aesthetics.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-02-01
Started: 2022-02-01

Creation of in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-createTables.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-02-22
Started: 2022-02-01

Creation of standard in-text tables with the inTextSummaryTable package

Laure Cougnaud

Rendered frominTextSummaryTable-standardTables.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-02-01
Started: 2022-02-01

Exporting in-text tables

Laure Cougnaud

Rendered frominTextSummaryTable-exportTables.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-02-01
Started: 2022-02-01

Introduction to the inTextSummaryTable package

Laure Cougnaud

Rendered frominTextSummaryTable-introduction.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2022-02-01
Started: 2022-02-01

Visualization functionalities

Laure Cougnaud

Rendered frominTextSummaryTable-visualization.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2024-06-12
Started: 2022-02-01

Readme and manuals

Help Manual

Help pageTopics
Check if variable(s) are present in reference: either in columns in a dataset or in reference set.checkVar
Check the 'varLabInclude' variable.checkVarLabInclude
Combine objectscombine
Combine summary statistics tablecombine.summaryTable
Combine the column total for a combined summary tablecombineColTotal
Create a data.frame combining a set of records from same or multiple variables.combineVariables
Compute summary statistics of interest of an unique variable of interest.computeSummaryStatistics
Compute summary statistics for a specific dataset and variables of interestcomputeSummaryStatisticsTable
Convert summary statistics table to flextableconvertSummaryStatisticsTableToFlextable
Convert flag variable to a format such as only the flagged records are counted in the summary table.convertVarFlag
Convert 'rowVar', 'colVar' and character 'var' in 'data' to factorconvertVarRowVarColVarToFactor
Convert vector to a bincode of 0/1 based on consecutive values in the vector.convertVectToBinary
Create a flextable, setting the column names to syntactic names if it is not the case.createFlextableWithHeader
Compute the percentage coefficient of variation, (in a scale from 0 to 100).cv
Export an objectexport
Export a summary table to 'docx', 'pptx' or 'html' format (interactive table)export.summaryTable exportSummaryStatisticsTable
Export flextable to docx fileexportFlextableToDocx
Export summary table to an interactive DT table, e.g. to be exported into an html document.exportSummaryStatisticsTableToDT
Export summary table to a flextable object, e.g. to be exported in Word or PowerPoint.exportSummaryStatisticsTableToFlextable
Format a percentage.formatPercentage
Format summary statistics table for exportformatSummaryStatisticsTable
Merge nested rows of a summary table for a format compatible with 'flextable'formatSummaryStatisticsTableFlextable
Compute geometric coefficient of variation (in a scale from 0 to 100).geomCV
Compute geometric mean.geomMean
Compute geometric standard deviationgeomSD
Compute geometric standard error of the mean.geomSE
Get color palette for the tablesgetColorPaletteTable
Get dimension of the page available for content for standard Word report or PowerPoint presentation.getDimPage
Format or create flextable for listings.getListing
Get maximum number of decimals in a variable, based on pre-defined rule and/or data.getMaxNDecimals
Get maximum number of decimals in a variable based on the data ('getNDecimalsData')getMaxNDecimalsData
Get number of decimals for a specific vector.getNDecimals
Get number of decimals based on the data in a numeric vector. Note: NA is returned if the element is missing (NA).getNDecimalsData
Get number of decimals based pre-defined rule(s).getNDecimalsRule
Get position(s) (start, end) of a pattern in a string.getPatternPosition
Get default set of statistics for one particular variable.getStats
Get default set of statistics for variables of interest and specific dataset.getStatsData
Get summary statistics tablegetSummaryStatisticsTable
inTextSummaryTable: creation of in-text summary tableinTextSummaryTable-package inTextSummaryTable
Arguments used across the functions of the inTextSummaryTable package.inTextSummaryTable-common-args
Common arguments for the functionalities of the inTextSummaryTable package for DT export.inTextSummaryTable-DT-args
Common arguments for the functionalities of the inTextSummaryTable package for flextable export.inTextSummaryTable-flextable-args
Statistics in the in-text table package.inTextSummaryTable-stats
Common arguments for the for the statistics utility functions of the inTextSummaryTable package.inTextSummaryTable-stats-utility
Page dimension for powerpointspageDimPresentation
Post-process the summary statistics table with variable flag.postProcessVarFlag
Compute standard error of the mean.se
Plot subject summary profile.subjectProfileSummaryPlot
Plot a table with 'ggplot' of a text variable of interest.subjectProfileSummaryTable
'summaryTable'summaryTable
Colors for tables in a presentation styletableColorsPresentation
Colors for tables in a report styletableColorsReport
Get unique variables with meaningful order.uniqueVarWithOrder
Custom function to write table to a text filewriteTable